Egg bites in a muffin tin.

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Oven-Baked Muffin Tin Egg Bites

5 from 9 votes
Prep Time 15 minutes
Cook Time 30 minutes
Total Time 45 minutes
Straightforward oven-baked Muffin Tin Egg Bites made by blending whole eggs cottage cheese, and other toppings to create a golden, fluffy center with slightly crisp edges that mimic your favorite morning omelette.
JUMP TO RECIPE

By Candice Walker on July 25, 2019 (Last updated September 8, 2026). This post may contain affiliate links. Read my disclosure policy.

Skip the soggy water baths and enjoy straightforward, oven-baked egg bites with a classic, omelet-style texture. Blending whole eggs with cottage cheese creates a golden, fluffy center with delightfully crisp edges that never turn spongy. Loaded with turkey bacon, broccoli, and melted pepper jack, this naturally gluten-free meal prep favorite comes together in 45 minutes and reheats perfectly every time.

By baking these directly in the oven, you get a traditional scrambled-egg or omelet-style bite with structural body, airy fluffiness, and slightly browned, crispy edges that steam-cooked egg bites miss.

Three yellow egg bites on a white patterned plate.

🧾Ingredient ideas

A collection of ingredients to make muffin tin egg bites with written labels over each one.

The veggies in this recipe are just a place to start. If you’re looking for a Persian-style bite, you can turn this kuku sabzi (herb frittata) into egg bites, too! The best egg bites have all your favorite ingredients in them:

  • BEC – vegan or turkey bacon, egg, and cheddar
  • Go Green – broccoli, green bell pepper, asparagus
  • Simple – egg, cheese, seasoning of choice
  • Classic – broccoli and cheddar, like your favorite soup
  • Italian – pesto, chopped tomatoes, parmesan
  • Greek – spinach, feta, red pepper, and olives

See the recipe card for full information on ingredients and quantities.

👩‍🍳 How to Make this Recipe

Broccoli, peppers, and turkey bacon in a large pan.
  • Start by pre-heating your oven to 350F. While your oven is heating up, you need to heat the oil in a medium pan.
  • Cook the broccoli, onion, bell pepper, and turkey bacon until all the veggies and bacon have slightly softened and are aromatic. This should take about 5 minutes. When ready, set these aside.
Eggs and cottage cheese in a blender with a black handle next to chopped vegetables.
  • Next, in a blender or food processor, add the eggs, cottage cheese, salt, and pepper. Blend or food process the mixture until smooth.
Overhead view of a 12 count muffin tin pan containing vegetables and turkey bacon.
  • Coat a standard muffin tin (12 cup spaces) with cooking spray. Divide the veggie and bacon mixture equally between each muffin cup. Do not press them down, because you need to leave space in between so that the egg mixture can fill up the gaps.
Overhead view of a 12 count muffin tin pan containing uncooked eggs, vegetables cheese, and turkey bacon.
  • Next, divide the egg mixture and pour it evenly into the 12 cups over the top of the veggies and the bacon. Sprinkle your cheese evenly over each cup, as shown.

⭐ Pro Tip

I have made this recipe using a non-stick muffin tin and a regular muffin tin. If using a regular muffin tin, add a little extra cooking spray or butter. You can also cook them in silicone cupcake liners.

Overhead view of a 12 count muffin tin pan containing cooked eggs, vegetables cheese, and turkey bacon.
  • Place in the oven and cook for around 20-25 minutes until the eggs are set.
Cooked egg bites in a tin pan and placed on white patterned plates.
  • Remove from the oven and cool the egg cups for about 2-3 minutes. To release the egg cups from the tin, lightly run a knife along the edge of each cup to ease them out. Eat now or freeze and store to enjoy later!
Cartoon version of a woman in a pink dress with a flower and curly dark hair.

Candice Recommends

Freeze the egg cups in a sealed container and reheat them for a few minutes in the microwave when ready to eat. They are good for up to 2 months in the freezer.

To reheat, wrap frozen egg cups in a damp paper towel to help evenly steam them through, then microwave for 50 seconds, then 10 seconds at a time until heated. For refrigerated egg cups, microwave for 20 seconds, then 10 seconds at a time until heated.

Cooked egg bites in a tin pan and placed on white patterned plates.

☀️ More Breakfast Recipes

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Egg bites in a muffin tin.

Oven-Baked Muffin Tin Egg Bites

5 from 9 votes
Straightforward oven-baked Muffin Tin Egg Bites made by blending whole eggs cottage cheese, and other toppings to create a golden, fluffy center with slightly crisp edges that mimic your favorite morning omelette.
Prep Time 15 minutes
Cook Time 30 minutes
Total Time 45 minutes
Servings: 4
Course: Breakfast
Cuisine: American
Calories: 355

Ingredients

  • 2 cups broccoli chopped
  • ¼ cup onion diced
  • ¼ cup red bell pepper diced
  • 2 tbsp oil olive, avocado, canola, sunflower seed, etc.
  • ¾ cup Pepper Jack cheese shredded
  • 8 large eggs
  • ½ cup cottage cheese
  • 3 slices turkey bacon or vegan bacon, chopped
  • Pinch salt
  • ¼ tsp pepper
  • Cooking spray

Equipment

Instructions

  1. Preheat oven to 350F.
  2. In the meantime, heat the oil in a medium pan. Cook the broccoli, onion, bell pepper, and turkey bacon until the veggies are slightly softened and aromatic, ~5 minutes. Set aside.
  3. In a blender, add the eggs, cottage cheese, salt, and pepper. Blend until smooth.
  4. Coat 12 standard muffin cups with cooking spray. Divide the broccoli and bacon mixture evenly. Do not press down. Leaving the space allows for the egg mixture to fill.
  5. Divide the egg mixture into the 12 cups over the broccoli and bacon mixture.
  6. Sprinkle the cheese mixture evenly over each cup.
  7. Cook 20-25 minutes until the eggs are set.
  8. Cool for 2-3 minutes. To release, lightly run a knife along the edge of each bit.

Notes

Freeze in a sealed container and reheat in the microwave for breakfast on the go! Serve with broccoli coins.
I have made this recipe using a non-stick and regular muffin tin. If using a regular muffin tin, it is helpful to add a little extra cooking spray or butter. You can also cook them in cupcake liners.
Reheat frozen egg cups wrapped in a damp paper towel in the microwave for 50 seconds, then 10 seconds at a time until heated through.

Nutrition

Calories355kcalCarbohydrates7gProtein24gFat26gSaturated Fat9gCholesterol361mgSodium590mgPotassium385mgFiber2gSugar3gVitamin A1250IUVitamin C53.2mgCalcium250mgIron2.3mg

Tried this recipe?

Let us know how it was!

5 Comments

  1. Just made these in a microwave muffin pan adding some precooked cauliflower riced, some garlic powder and paprika and they were a hugh success. Starting on another batch since I have only one microwave pan (6 cup) !!!! Thanks for the recipe.

  2. 5 stars
    Just made these in regular muffin tin size and mini muffin tin size (12 min bake). Both came out perfect. I used coconut oil to grease both tins so they just slipped out without any sticking. Thanks for the recipe!

5 from 9 votes (8 ratings without comment)

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